nf-core/kallisto/index @ 0.0.0-0c7146d
Summary
Create kallisto index
Get started
Add the following snippet to your workflow script to include this module.
include { KALLISTO_INDEX } from 'nf-core/kallisto/index'
License
MIT License
Process
Name
|
KALLISTO_INDEX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
genome fasta file *.{fasta}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
kallisto
directory
|
Kallisto genome index *.idx
|
#2
versions_kallisto
tuple
${task.process}
string
|
The name of the process |
|---|---|
kallisto
string
|
The name of the tool |
kallisto 2>&1 | head -1 | sed "s/^kallisto //; s/Usage.*//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kallisto | Quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | https://pachterlab.github.io/kallisto/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkallisto%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kallisto/index/blobs/sha256:66cfb38590646abf6007fef81c19fe01796bd362007e220a1557339638542df3 |
| Size | 2.1 KB |
| Checksum | sha256:66cfb38590646abf6007fef81c19fe01796bd362007e220a1557339638542df3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:43 (UTC) | 1 | 2.1 KB | - |