nf-core/kaiju/kaiju2krona @ 0.0.0-0c7146d
Summary
Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona.
Get started
Add the following snippet to your workflow script to include this module.
include { KAIJU_KAIJU2KRONA } from 'nf-core/kaiju/kaiju2krona'
License
MIT License
Process
Name
|
KAIJU_KAIJU2KRONA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
tsv
file
|
Kaiju tab-separated output file *.{tsv,txt}
|
db
file
|
Kaiju database file |
|---|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Krona text-based input file converted from Kaiju report *.{txt,krona}
|
#2
versions_kaiju
tuple
${task.process}
string
|
The name of the process |
|---|---|
kaiju
string
|
The name of the tool |
kaiju -h 2>&1 | sed -n 1p | sed 's/^.*Kaiju //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| kaiju | Fast and sensitive taxonomic classification for metagenomics | https://kaiju.binf.ku.dk/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fkaiju%2Fkaiju2krona/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/kaiju/kaiju2krona/blobs/sha256:25f818bdc4c298bc78a9a256cfa20e7bab4574ad678923390228ee09e669c395 |
| Size | 2.5 KB |
| Checksum | sha256:25f818bdc4c298bc78a9a256cfa20e7bab4574ad678923390228ee09e669c395 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:33 (UTC) | 1 | 2.5 KB | - |