nf-core/jellyfish/dump @ 0.0.0-0c7146d
Summary
Dumps the results from a jellyfish binary file into a human readable format
Get started
Add the following snippet to your workflow script to include this module.
include { JELLYFISH_DUMP } from 'nf-core/jellyfish/dump'
License
MIT License
Process
Name
|
JELLYFISH_DUMP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
jf
file
|
Jellyfish binary k-mer database *.jf
|
Output
2 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${extension}
file
|
Human readable k-mer database in fasta format, or in 2-column space delimited format if the -c argument is provided *.{fa,txt}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| jellyfish | Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence | https://github.com/gmarcais/Jellyfish |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:50:15 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fjellyfish%2Fdump/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/jellyfish/dump/blobs/sha256:2f8be52a8d3e90edf8a3e279c221bd0c5c827ffabba0f3b73b62e1aaae95e599 |
| Size | 2.5 KB |
| Checksum | sha256:2f8be52a8d3e90edf8a3e279c221bd0c5c827ffabba0f3b73b62e1aaae95e599 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:50:15 (UTC) | 1 | 2.5 KB | - |