Nextflow Registry | nf-core/islandpath@0.0.0-0c7146d

nf-core/islandpath @ 0.0.0-0c7146d

Genomic island prediction in bacterial and archaeal genomes

genomes genomic islands prediction

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jvfe

Maintainers: @jvfe

Genomic island prediction in bacterial and archaeal genomes

Add the following snippet to your workflow script to include this module.

include { ISLANDPATH } from 'nf-core/islandpath'

MIT License

Process

`Name`	`ISLANDPATH`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`genome` file	Genome file in .gbk or .embl format. pattern: "*.{gbk, embl, gbff}"

Output 3 channels

#1 gff tuple

`meta` file	GFF file listing the predicted genomic islands and their coordinates `*.gff`
`*.gff` file	GFF file listing the predicted genomic islands and their coordinates `*.gff`

#2 log

`Dimob.log` file	Log file of the islandpath run `*.log`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
islandpath	IslandPath-DIMOB is a standalone software to predict genomic islands (GIs - clusters of genes in prokaryotic genomes of probable horizontal origin) in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.	https://github.com/brinkmanlab/islandpath

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:49:27 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fislandpath/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/islandpath/blobs/sha256:d7a6e0f189c79e0289cb6c5910751ecdf166b8c398b0031bb795a7e5f7ad9de9
Size	2.4 KB
Checksum	sha256:d7a6e0f189c79e0289cb6c5910751ecdf166b8c398b0031bb795a7e5f7ad9de9
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:49:27 (UTC)		1	2.4 KB	-