Nextflow Registry | nf-core/immunedeconv@0.0.0-0c7146d

nf-core/immunedeconv @ 0.0.0-0c7146d

Perform immune cell deconvolution using RNA-seq data and various computational methods.

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @grst @nschcolnicov

Maintainers: @grst @nschcolnicov

Perform immune cell deconvolution using RNA-seq data and various computational methods.

Add the following snippet to your workflow script to include this module.

include { IMMUNEDECONV } from 'nf-core/immunedeconv'

MIT License

Process

`Name`	`IMMUNEDECONV`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`input_file` file	Input matrix with genes in rows and samples in columns. `*.tsv`
`method` string	The deconvolution method to use (e.g., 'CIBERSORT', 'EPIC', 'xCell').
`function` string	The specific function from immunedeconv to execute for analysis.

`gene_symbol_col` string	Column name for gene symbols in the matrix input file.

Output 3 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 deconv_plots tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.png` file	Visualization plots generated during deconvolution. `*.png`

#3 deconv_table tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.deconvolution_results.tsv` file	Results table containing deconvolution data. `*.deconvolution_results.tsv`

Tool	Description	Homepage
immunedeconv	The immunedeconv R package provides functions for immune cell deconvolution from RNA-seq data. It supports multiple deconvolution methods and generates results as well as visualizations.	https://github.com/icbi-lab/immunedeconv

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:49:04 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fimmunedeconv/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/immunedeconv/blobs/sha256:88d72210a754dea431636c2e3ee7a4fbe5ea002d006af5cf873533c54f9fc008
Size	4.0 KB
Checksum	sha256:88d72210a754dea431636c2e3ee7a4fbe5ea002d006af5cf873533c54f9fc008
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:49:04 (UTC)		1	4.0 KB	-