nf-core/icountmini/peaks @ 0.0.0-0c7146d
Summary
Runs iCount peaks on a BED file of crosslinks
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_PEAKS } from 'nf-core/icountmini/peaks'
License
MIT License
Process
Name
|
ICOUNTMINI_PEAKS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks *.{bed}
|
sigxls
file
|
TSV file of sigxls from iCount sigxls *.{tsv}
|
Output
2 channels
#1
peaks
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.peaks.bed.gz
file
|
Crosslinks deemed significant by iCount *.{bed.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://github.com/ulelab/iCount-Mini |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fpeaks/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/icountmini/peaks/blobs/sha256:fb3fc99fc14f30fa56fb7e8255287d045437d02120c0741c286c61ea801a0eeb |
| Size | 2.5 KB |
| Checksum | sha256:fb3fc99fc14f30fa56fb7e8255287d045437d02120c0741c286c61ea801a0eeb |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:37 (UTC) | 1 | 2.5 KB | - |