nf-core/homer/maketagdirectory @ 0.0.0-0c7146d
Summary
Create a tag directory with the HOMER suite
Get started
Add the following snippet to your workflow script to include this module.
include { HOMER_MAKETAGDIRECTORY } from 'nf-core/homer/maketagdirectory'
License
MIT License
Process
Name
|
HOMER_MAKETAGDIRECTORY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/BED/SAM file *.{bam,bed,sam}
|
fasta
file
|
Fasta file of reference genome *.fasta
|
|---|
Output
3 channels
#1
tagdir
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tagdir
directory
|
The "Tag Directory" *_tagdir
|
#2
taginfo
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tagdir/tagInfo.txt
directory
|
The tagInfo.txt included to ensure there's proper output *_tagdir/tagInfo.txt
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| homer | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. | n/a |
| samtools | SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. | http://www.htslib.org/ |
| DESeq2 | Differential gene expression analysis based on the negative binomial distribution | https://bioconductor.org/packages/DESeq2 |
| edgeR | Empirical Analysis of Digital Gene Expression Data in R | https://bioinf.wehi.edu.au/edgeR |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:10 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Fmaketagdirectory/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/homer/maketagdirectory/blobs/sha256:42c76ce4ab569ba6f3dc517eea11eae8ee83072362a01345cfde0d6f0c7ff850 |
| Size | 3.6 KB |
| Checksum | sha256:42c76ce4ab569ba6f3dc517eea11eae8ee83072362a01345cfde0d6f0c7ff850 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:10 (UTC) | 1 | 3.6 KB | - |