Nextflow Registry | nf-core/homer/findpeaks@0.0.0-0c7146d

nf-core/homer/findpeaks @ 0.0.0-0c7146d

Find peaks with HOMER suite

annotation peaks enrichment

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @edmundmiller

Maintainers: @edmundmiller

Find peaks with HOMER suite

Add the following snippet to your workflow script to include this module.

include { HOMER_FINDPEAKS } from 'nf-core/homer/findpeaks'

MIT License

Process

`Name`	`HOMER_FINDPEAKS`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`tagDir` directory	The 'Tag Directory' `tagDir`

`uniqmap` directory	(directory of binary files specifying uniquely mappable locations) Download from http://biowhat.ucsd.edu/homer/groseq/ `uniqmap/`

Output 2 channels

#1 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.peaks.txt` file	Peaks in txt file `*.peaks.txt`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
homer	HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis.	http://homer.ucsd.edu/homer/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:48:08 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Ffindpeaks/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/homer/findpeaks/blobs/sha256:3d3711676d5bfd4d90b7ad90f85822a717e8145054f800e4d3d31d66507a6402
Size	3.1 KB
Checksum	sha256:3d3711676d5bfd4d90b7ad90f85822a717e8145054f800e4d3d31d66507a6402
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:48:08 (UTC)		1	3.1 KB	-