nf-core/homer/annotatepeaks @ 0.0.0-0c7146d
Summary
Annotate peaks with HOMER suite
Get started
Add the following snippet to your workflow script to include this module.
include { HOMER_ANNOTATEPEAKS } from 'nf-core/homer/annotatepeaks'
License
MIT License
Process
Name
|
HOMER_ANNOTATEPEAKS |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
peak
file
|
Peak file to annotate |
fasta
file
|
Fasta file of reference genome *.fasta
|
|---|
gtf
file
|
GTF file of reference genome *.gtf
|
|---|
Output
3 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*annotatePeaks.txt
file
|
Annotated peaks in txt file *annotatePeaks.txt
|
#2
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*annStats.txt
file
|
Annotation statistics in txt file *annStats.txt
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| homer | HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:48:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhomer%2Fannotatepeaks/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/homer/annotatepeaks/blobs/sha256:0480f55431b5f1241ca8cab939aa62db4b7e948bdac9141b0c0edf4a37efeef5 |
| Size | 2.7 KB |
| Checksum | sha256:0480f55431b5f1241ca8cab939aa62db4b7e948bdac9141b0c0edf4a37efeef5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:48:06 (UTC) | 1 | 2.7 KB | - |