Nextflow Registry | nf-core/hmmer/hmmrank@0.0.0-0c7146d

nf-core/hmmer/hmmrank @ 0.0.0-0c7146d

R script that scores output from multiple runs of hmmer/hmmsearch

hmmer hmmsearch rank

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

R script that scores output from multiple runs of hmmer/hmmsearch

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMRANK } from 'nf-core/hmmer/hmmrank'

MIT License

Process

`Name`	`HMMER_HMMRANK`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`tblouts` file	table outputs from hmmsearch `*.tsv.gz`

Output 2 channels

#1 hmmrank tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.hmmrank.tsv.gz` file	TSV file with ranked hmmer results `*.hmmrank.tsv.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org/
R	A Language and Environment for Statistical Computing	https://www.r-project.org/
Tidyverse	Tidyverse: R packages for data science	https://www.tidyverse.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:58 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmrank/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/hmmrank/blobs/sha256:e96549b3977281d4b7fcf4e045242f52cfaaa82e036eff0f5323f4736d779f78
Size	3.2 KB
Checksum	sha256:e96549b3977281d4b7fcf4e045242f52cfaaa82e036eff0f5323f4736d779f78
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:58 (UTC)		1	3.2 KB	-