Nextflow Registry | nf-core/hmmer/hmmfetch@0.0.0-0c7146d

nf-core/hmmer/hmmfetch @ 0.0.0-0c7146d

extract hmm from hmm database file or create index for hmm database

hidden Markov model HMM hmmer hmmfetch

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erikrikarddaniel

Maintainers: @erikrikarddaniel

extract hmm from hmm database file or create index for hmm database

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMFETCH } from 'nf-core/hmmer/hmmfetch'

MIT License

Process

`Name`	`HMMER_HMMFETCH`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`hmm` file	HMM file with multiple HMM models `*.hmm`

`key` string	Name of HMM to extract. Specify either this or keyfile. If none is specified, an index will be built.

`keyfile` file	File containing list of HMM models to extract. Specify either this or key. If none is specified, an index will be built. `*.txt`

`index` file	Index file from another run.

Output 3 channels

#1 hmm tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.hmm` file	File with one or more HMM models `selection.hmm`

#2 index tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.ssi` file	Index for HMM database. Created if neither key nor keyfile is specified. `*.ssi`

#3 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:54 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmfetch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/hmmfetch/blobs/sha256:aa141f5f560cd5e414eb3c7d20e2ba3b1d0a77da481f13cc1685a486f4e67bd5
Size	2.8 KB
Checksum	sha256:aa141f5f560cd5e414eb3c7d20e2ba3b1d0a77da481f13cc1685a486f4e67bd5
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:54 (UTC)		1	2.8 KB	-