nf-core/hmmer/hmmbuild @ 0.0.0-0c7146d
Summary
create an hmm profile from a multiple sequence alignment
Get started
Add the following snippet to your workflow script to include this module.
include { HMMER_HMMBUILD } from 'nf-core/hmmer/hmmbuild'
License
MIT License
Process
Name
|
HMMER_HMMBUILD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
alignment
file
|
multiple sequence alignment in fasta, clustal, stockholm or phylip format *
|
mxfile
file
|
read substitution score matrix, for use when building profiles from single sequences (--singlemx option) *
|
|---|
Output
3 channels
#1
hmm
tuple
meta
file
|
Gzipped HMM file *.{hmm.gz}
|
|---|---|
*.hmm.gz
file
|
Gzipped HMM file *.{hmm.gz}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
hmmbuildout
*.hmmbuild.txt
file
|
HMM build output |
|---|
| Tool | Description | Homepage |
|---|---|---|
| hmmer | Biosequence analysis using profile hidden Markov models | http://hmmer.org |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:47:52 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/hmmbuild/blobs/sha256:a88540fd14f845ed706d3574c00dd0c2b631ace7f4b14fce324db2cb733d5417 |
| Size | 2.6 KB |
| Checksum | sha256:a88540fd14f845ed706d3574c00dd0c2b631ace7f4b14fce324db2cb733d5417 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:47:52 (UTC) | 1 | 2.6 KB | - |