Nextflow Registry | nf-core/hmmer/hmmalign@0.0.0-0c7146d

nf-core/hmmer/hmmalign @ 0.0.0-0c7146d

hmmalign from the HMMER suite aligns a number of sequences to an HMM profile

alignment HMMER profile amino acid nucleotide

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @erikrikarddaniel @jfy133

Maintainers: @erikrikarddaniel @jfy133 @vagkaratzas

hmmalign from the HMMER suite aligns a number of sequences to an HMM profile

Add the following snippet to your workflow script to include this module.

include { HMMER_HMMALIGN } from 'nf-core/hmmer/hmmalign'

MIT License

Process

`Name`	`HMMER_HMMALIGN`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test' ]
`fasta` file	Amino acid or nucleotide gzipped compressed fasta file `*.{fna.gz,faa.gz,fasta.gz,fa.gz}`

`hmm` file	A gzipped HMM file `*.hmm.gz`

Output 2 channels

#1 sto tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.sto.gz` file	Multiple alignment in gzipped Stockholm format `*.sto.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hmmer	Biosequence analysis using profile hidden Markov models	http://hmmer.org/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:50 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Fhmmalign/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hmmer/hmmalign/blobs/sha256:9601227476b62996b53e15ca8045915afdb4fe5e9e4377babb617cdc761f5200
Size	2.4 KB
Checksum	sha256:9601227476b62996b53e15ca8045915afdb4fe5e9e4377babb617cdc761f5200
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:50 (UTC)		1	2.4 KB	-