nf-core/hisat3n/build @ 0.0.0-0c7146d
Summary
Build HISAT-3N index for nucleotide conversion sequencing alignment
Get started
Add the following snippet to your workflow script to include this module.
include { HISAT3N_BUILD } from 'nf-core/hisat3n/build'
License
MIT License
Process
Name
|
HISAT3N_BUILD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
fasta
file
|
Reference FASTA file *.{fa,fasta,fna}
|
Output
2 channels
#1
index
tuple
meta
map
|
Groovy Map containing reference information e.g. |
|---|---|
hisat3n
directory
|
Directory containing HISAT-3N index files hisat3n
|
#2
versions_hisat3n
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
hisat-3n
string
|
The tool name |
hisat-3n --version 2>&1 | head -1 | sed 's/.* //'
eval
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hisat-3n | HISAT-3N is designed for nucleotide conversion sequencing technologies and implemented based on HISAT2. | http://daehwankimlab.github.io/hisat2/hisat-3n/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:47:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhisat3n%2Fbuild/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hisat3n/build/blobs/sha256:9a9cec15b032b3e83c0dc1934a7f5b1e6d0736d35561de05602934d601cd8fb7 |
| Size | 2.7 KB |
| Checksum | sha256:9a9cec15b032b3e83c0dc1934a7f5b1e6d0736d35561de05602934d601cd8fb7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:47:33 (UTC) | 1 | 2.7 KB | - |