Nextflow Registry | nf-core/hicap@0.0.0-0c7146d

nf-core/hicap @ 0.0.0-0c7146d

Identify cap locus serotype and structure in your Haemophilus influenzae assemblies

fasta serotype Haemophilus influenzae

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

Identify cap locus serotype and structure in your Haemophilus influenzae assemblies

Add the following snippet to your workflow script to include this module.

include { HICAP } from 'nf-core/hicap'

MIT License

Process

`Name`	`HICAP`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	FASTA formatted assembly file `*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}`

`database_dir` directory	Optional - Directory containing locus database `/`

`model_fp` file	Optional - Prodigal model to use for gene prediction `*.{bin}`

Output 4 channels

#1 gbk tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.gbk` file	GenBank file and cap locus annotations `*.gbk`

#2 svg tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.svg` file	Visualization of annotated cap locus `*.svg`

#3 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	Detailed summary of cap locus annotations `*.tsv`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
hicap	In silico typing of the H. influenzae capsule locus	https://github.com/scwatts/hicap

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:47:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhicap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hicap/blobs/sha256:072b9389392ed56835cb8dca0c3d96dcb737f992e3f745d3ca91370045cde205
Size	2.9 KB
Checksum	sha256:072b9389392ed56835cb8dca0c3d96dcb737f992e3f745d3ca91370045cde205
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:47:12 (UTC)		1	2.9 KB	-