nf-core/haplogrep3/classify @ 0.0.0-0c7146d
Summary
classification into haplogroups
Get started
Add the following snippet to your workflow script to include this module.
include { HAPLOGREP3_CLASSIFY } from 'nf-core/haplogrep3/classify'
License
MIT License
Process
Name
|
HAPLOGREP3_CLASSIFY |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
inputfile
file
|
valid options are hsd, vcf, or fasta files *.{vcf,vcf.gz,fasta,hsd}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
text file with classification information *.{txt}
|
#2
versions_haplogrep3
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
haplogrep3
string
|
The tool name |
haplogrep3 | sed -n 's/.*Haplogrep 3 \([0-9.]\+\).*/\1/p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| haplogrep3 | A tool for mtDNA haplogroup classification. | https://github.com/genepi/haplogrep3 |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:46:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhaplogrep3%2Fclassify/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/haplogrep3/classify/blobs/sha256:02c175dfb732f4303594b00b751b6a7c84275d27cf5ca6ff70ba0be34f8d617f |
| Size | 2.3 KB |
| Checksum | sha256:02c175dfb732f4303594b00b751b6a7c84275d27cf5ca6ff70ba0be34f8d617f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:46:51 (UTC) | 1 | 2.3 KB | - |