nf-core/hamronization/summarize @ 0.0.0-0c7146d
Summary
Tool to summarize and combine all hAMRonization reports into a single file
Get started
Add the following snippet to your workflow script to include this module.
include { HAMRONIZATION_SUMMARIZE } from 'nf-core/hamronization/summarize'
License
MIT License
Process
Name
|
HAMRONIZATION_SUMMARIZE |
|---|
Input
2 channels
reports
file
|
List of multiple hAMRonization reports in either JSON or TSV format *.{json,tsv}
|
|---|
format
string
|
Type of final combined report file to be produced tsv|json|interactive
|
|---|
Output
4 channels
#1
tsv
hamronization_combined_report.tsv
file
|
hAMRonised summary in TSV format *.json
|
|---|
#2
html
hamronization_combined_report.html
file
|
hAMRonised summary in HTML format *.html
|
|---|
#3
json
hamronization_combined_report.json
file
|
hAMRonised summary in JSON format *.json
|
|---|
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hamronization | Tool to convert and summarize AMR gene detection outputs using the hAMRonization specification | https://github.com/pha4ge/hAMRonization/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:46:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fhamronization%2Fsummarize/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/hamronization/summarize/blobs/sha256:a139b964ead205c84e1236fb3d5af00c2a620c95ae36477b48a3f0b81bfafa35 |
| Size | 2.5 KB |
| Checksum | sha256:a139b964ead205c84e1236fb3d5af00c2a620c95ae36477b48a3f0b81bfafa35 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:46:43 (UTC) | 1 | 2.5 KB | - |