Nextflow Registry | nf-core/gtfsort@0.0.0-0c7146d

nf-core/gtfsort @ 0.0.0-0c7146d

Sort GTF files in chr/pos/feature order

sort genomics gtf

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @georgiakes

Maintainers: @georgiakes

Sort GTF files in chr/pos/feature order

Add the following snippet to your workflow script to include this module.

include { GTFSORT } from 'nf-core/gtfsort'

MIT License

Process

`Name`	`GTFSORT`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtf` file	Unsorted GTF/GFF file. `*.{gff,gtf}`

Output 2 channels

#1 gtf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.sorted.${gtf.extension}` file	Sorted GTF file `*.{gff,gtf}`

#2 versions_gtfsort tuple

`${task.process}` string	Name of the process
`gtfsort` string	Name of the tool
`gtfsort --version \|& sed "s/gtfsort //"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
gtfsort	A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.	https://github.com/alejandrogzi/gtfsort

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:45:49 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgtfsort/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gtfsort/blobs/sha256:716eec4a0c0096bd5254df3b231df751c93c20e5a18ed7f99d1375cc632d589d
Size	2.1 KB
Checksum	sha256:716eec4a0c0096bd5254df3b231df751c93c20e5a18ed7f99d1375cc632d589d
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:45:49 (UTC)		1	2.1 KB	-