Nextflow Registry | nf-core/gt/ltrharvest@0.0.0-0c7146d

nf-core/gt/ltrharvest @ 0.0.0-0c7146d

Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Predicts LTR retrotransposons using GenomeTools gt-ltrharvest utility

Add the following snippet to your workflow script to include this module.

include { GT_LTRHARVEST } from 'nf-core/gt/ltrharvest'

MIT License

Process

`Name`	`GT_LTRHARVEST`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`index` directory	Folder containing the suffixerator index files `suffixerator`

Output 5 channels

#1 gff3 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.gff3` file	GFF3 output when `-tabout no` argument is present `*.gff3`

#2 fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$out_name` file	FASTA output when `-out` argument is present `*.{fa,fsa,fasta}`

#3 tabout tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.tabout` file	Old tabular output by default or when `-tabout yes` argument is present `*.tabout`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

#5 inner_fasta tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`$outinner_name` file	FASTA output for inner regions when `-outinner` argument is present `*.{fa,fsa,fasta}`

Tool	Description	Homepage
gt	The GenomeTools genome analysis system	https://genometools.org/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:45:39 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgt%2Fltrharvest/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gt/ltrharvest/blobs/sha256:f56de6d766fa37076a666c9f6b6c0cd7b75562ba26a1456674319b0ae0286674
Size	3.3 KB
Checksum	sha256:f56de6d766fa37076a666c9f6b6c0cd7b75562ba26a1456674319b0ae0286674
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:45:39 (UTC)		1	3.3 KB	-