Nextflow Registry | nf-core/gt/gff3validator@0.0.0-0c7146d

nf-core/gt/gff3validator @ 0.0.0-0c7146d

GenomeTools gt-gff3validator utility to strictly validate a GFF3 file

genome gff3 annotation validation

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

GenomeTools gt-gff3validator utility to strictly validate a GFF3 file

Add the following snippet to your workflow script to include this module.

include { GT_GFF3VALIDATOR } from 'nf-core/gt/gff3validator'

MIT License

Process

`Name`	`GT_GFF3VALIDATOR`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`gff3` file	Input gff3 file `*.{gff,gff3}`

Output 3 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 error_log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.error.log` file	Log file for failed validation `*.error.log`

#3 success_log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test' ]`
`*.success.log` file	Log file for successful validation `*.success.log`

Tool	Description	Homepage
gt	The GenomeTools genome analysis system	https://genometools.org/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:45:37 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgt%2Fgff3validator/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gt/gff3validator/blobs/sha256:84ffdfcee5292f03c18ebb8b7c7efe0d3ea456fa86a403631923b97aea3dce5c
Size	2.6 KB
Checksum	sha256:84ffdfcee5292f03c18ebb8b7c7efe0d3ea456fa86a403631923b97aea3dce5c
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:45:37 (UTC)		1	2.6 KB	-