Nextflow Registry | nf-core/gstama/polyacleanup@0.0.0-0c7146d

nf-core/gstama/polyacleanup @ 0.0.0-0c7146d

Helper script, remove remaining polyA sequences from Full Length Non Chimeric reads (Pacbio isoseq3)

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sguizard

Maintainers: @sguizard

Helper script, remove remaining polyA sequences from Full Length Non Chimeric reads (Pacbio isoseq3)

Add the following snippet to your workflow script to include this module.

include { GSTAMA_POLYACLEANUP } from 'nf-core/gstama/polyacleanup'

MIT License

Process

`Name`	`GSTAMA_POLYACLEANUP`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Full Length Non Chimeric reads in fasta format `*.{fa,fasta}`

Output 4 channels

#1 fasta tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_tama.fa.gz` file	The Full Length Non Chimeric reads cleaned from remaining polyA tails. The sequences are in FASTA format compressed with gzip. `*_tama.fa.gz`

#2 tails tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_tama_tails.fa.gz` file	A gzip compressed FASTA file of trimmed polyA tails. `*_tama_tails.fa.gz`

#3 report tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*_tama_polya_flnc_report.txt.gz` file	A text file describing the number of polyA tails removed and their length. Compressed with gzip. `*_tama_polya_flnc_report.txt.gz`

#4 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
gstama	Gene-Switch Transcriptome Annotation by Modular Algorithms	https://github.com/sguizard/gs-tama

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:45:34 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgstama%2Fpolyacleanup/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gstama/polyacleanup/blobs/sha256:93fd1f776b670c585f0fd2c4078fdcf6331a7e166700d12947fcab0c4400d71a
Size	4.4 KB
Checksum	sha256:93fd1f776b670c585f0fd2c4078fdcf6331a7e166700d12947fcab0c4400d71a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:45:34 (UTC)		1	4.4 KB	-