Nextflow Registry | nf-core/goatools/findenrichment@0.0.0-d79edc8

nf-core/goatools/findenrichment @ 0.0.0-d79edc8

Find enriched GO terms in a list of genes

goatools enrichment ontology geneontology go genomics

Latest version: 0.0.0-d79edc8

Total downloads: 1

Source: nf-core/modules

Authors: @itrujnara

Maintainers: @itrujnara

Find enriched GO terms in a list of genes

Add the following snippet to your workflow script to include this module.

include { GOATOOLS_FINDENRICHMENT } from 'nf-core/goatools/findenrichment'

MIT License

Process

`Name`	`GOATOOLS_FINDENRICHMENT`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`study_list` file	Plain text file with one study gene identifier per line `*.{txt,tsv,csv}`
`population_list` file	Plain text file with one background population gene identifier per line `*.{txt,tsv,csv}`
`annotation` file	Gene-to-GO association file used by GOATOOLS `*`

`obo` file	Gene Ontology OBO file `*.obo`

`goslim` file	GO slim mapping file used for slim-specific enrichment summaries `*.obo`

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.tsv` file	GO enrichment analysis table generated by GOATOOLS find_enrichment `*.tsv`

#2 versions_goatools tuple

`${task.process}` string	The name of the process
`goatools` string	The name of the tool
`goatools --version` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
goatools	Python scripts to find enrichment of GO terms	https://github.com/tanghaibao/goatools

Version	0.0.0-d79edc8
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	21 Apr 2026 21:15:39 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgoatools%2Ffindenrichment/0.0.0-d79edc8/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/goatools/findenrichment/blobs/sha256:0c8532f512454836a8e7e006cbed6508a0e7926d6308ee4aff5320ecdcb830df
Size	2.6 KB
Checksum	sha256:0c8532f512454836a8e7e006cbed6508a0e7926d6308ee4aff5320ecdcb830df
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-d79edc8	21 Apr 2026 21:15:39 (UTC)		1	2.6 KB	-