nf-core/geofetch @ 0.0.0-0c7146d
Summary
geofetch is a command-line tool that downloads and organizes data and metadata from GEO and SRA
Get started
Add the following snippet to your workflow script to include this module.
include { GEOFETCH } from 'nf-core/geofetch'
License
MIT License
Process
Name
|
GEOFETCH |
|---|
Input
1 channel
geo_accession
string
|
GEO accession ID |
|---|
Output
2 channels
#1
samples
tuple
${geo_accession}
file
|
List of sample files fetched ${geo_accession}/*.CEL.gz
|
|---|---|
${geo_accession}/*.CEL.gz
file
|
List of sample files fetched ${geo_accession}/*.CEL.gz
|
#2
versions_geofetch
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
geofetch
string
|
The tool name |
geofetch --version 2>&1 | sed '1!d; s/^geofetch //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| geofetch | Downloads data and metadata from GEO and SRA and creates standard PEPs. | http://geofetch.databio.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0b45cc097cafcd4768e2f79b504333fee85940bc |
| Release Date | 08 Apr 2026 18:44:18 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgeofetch/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/geofetch/blobs/sha256:7a0ae3e5c130b81e2cb1389c6867b4f3ecff7aefc761ec627e6f3d5ee0ea63f8 |
| Size | 2.5 KB |
| Checksum | sha256:7a0ae3e5c130b81e2cb1389c6867b4f3ecff7aefc761ec627e6f3d5ee0ea63f8 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0b45cc0 | 29 Apr 2026 21:15:35 (UTC) | 0 | 2.5 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:44:18 (UTC) | 1 | 2.5 KB | - |