nf-core/genmod/score @ 0.0.0-0c7146d
Summary
Score the variants of a vcf based on their annotation
Get started
Add the following snippet to your workflow script to include this module.
include { GENMOD_SCORE } from 'nf-core/genmod/score'
License
MIT License
Process
Name
|
GENMOD_SCORE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input_vcf
file
|
vcf file *.{vcf}
|
fam
file
|
PED file with family information |
score_config
file
|
rank model config file *.{ini}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_score.vcf
file
|
Output VCF file *.{vcf}
|
#2
versions_genmod
tuple
${task.process}
string
|
Name of the process |
|---|---|
genmod
string
|
Name of the tool |
genmod --version | sed 's/^.*genmod version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| genmod | Annotate genetic inheritance models in variant files | https://github.com/Clinical-Genomics/genmod |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:44:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgenmod%2Fscore/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/genmod/score/blobs/sha256:3175d823f44f6f6d65b2a893adc74e738dd4f8ae66c5ae68b23edd106f2e92f6 |
| Size | 2.5 KB |
| Checksum | sha256:3175d823f44f6f6d65b2a893adc74e738dd4f8ae66c5ae68b23edd106f2e92f6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:44:04 (UTC) | 1 | 2.5 KB | - |