Nextflow Registry | nf-core/genmap/map@0.0.0-0c7146d

nf-core/genmap/map @ 0.0.0-0c7146d

create mappability files for a genome

mappability index fasta bedgraph csv wig

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @jianhong @nvnieuwk

Maintainers: @jianhong @nvnieuwk

create mappability files for a genome

Add the following snippet to your workflow script to include this module.

include { GENMAP_MAP } from 'nf-core/genmap/map'

MIT License

Process

`Name`	`GENMAP_MAP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`index` directory	index directory

#2 tuple

`meta2` map	Groovy Map containing regions information e.g. [ id:'test', single_end:false ]
`regions` file	optional - a bed file with regions to define the mappability off `*.bed`

Output 5 channels

#1 csv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.csv` file	genmap csv mappability file `*.csv`

#2 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.txt` file	genmap text mappability file `*.txt`

#3 wig tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.wig` file	genmap wig mappability file `*.wig`

#4 bedgraph tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bedgraph` file	genmap bedgraph mappability file `*.bedgraph`

#5 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
genmap	Ultra-fast computation of genome mappability.	https://github.com/cpockrandt/genmap

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:43:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgenmap%2Fmap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/genmap/map/blobs/sha256:c0fc579e7071e400504b0d8f4f61f269346da1017b33284746f7c4141ac230ae
Size	3.0 KB
Checksum	sha256:c0fc579e7071e400504b0d8f4f61f269346da1017b33284746f7c4141ac230ae
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:43:56 (UTC)		1	3.0 KB	-