nf-core/gem3/gem3indexer @ 0.0.0-0c7146d
Summary
Create a GEM index from a FASTA file
Get started
Add the following snippet to your workflow script to include this module.
include { GEM3_GEM3INDEXER } from 'nf-core/gem3/gem3indexer'
License
MIT License
Process
Name
|
GEM3_GEM3INDEXER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing information about the fasta file e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A reference FASTA file to index *.{fasta,fa,fna}
|
Output
3 channels
#1
info
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.info
file
|
The execution log *.info
|
#2
index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.gem
file
|
The GEM index file *.gem
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gem3 | The GEM indexer (v3). | https://github.com/miqalvarez/gem3/tree/gem3-indexer |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:43:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgem3%2Fgem3indexer/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gem3/gem3indexer/blobs/sha256:668a42ac77a944a8c8615237b25507fb9cb4c4b1fa1e4c0a3f6419a96a39e1af |
| Size | 2.2 KB |
| Checksum | sha256:668a42ac77a944a8c8615237b25507fb9cb4c4b1fa1e4c0a3f6419a96a39e1af |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:43:47 (UTC) | 1 | 2.2 KB | - |