nf-core/gem2/gem2bedmappability @ 0.0.0-0b45cc0
Summary
Convert a mappability file to bedgraph format
Get started
Add the following snippet to your workflow script to include this module.
include { GEM2_GEM2BEDMAPPABILITY } from 'nf-core/gem2/gem2bedmappability'
License
MIT License
Process
Name
|
GEM2_GEM2BEDMAPPABILITY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
map
file
|
The mappability file created from the index *.mappability
|
#2
tuple
meta2
map
|
Groovy Map containing index information |
|---|---|
index
file
|
The index of the reference FASTA *.gem
|
Output
3 channels
#1
sizes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sizes
file
|
The chromosome sizes *.sizes
|
#2
bedgraph
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bg
file
|
The resulting bedgraph file *.bg
|
#3
versions_gem2
tuple
${task.process}
string
|
The name of the process |
|---|---|
gem2
string
|
The name of the tool |
20200110
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gem2 | GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability. | https://paoloribeca.science/gem |
| Version | 0.0.0-0b45cc0 |
|---|---|
| Commit ID | 0b45cc097cafcd4768e2f79b504333fee85940bc |
| Release Date | 29 Apr 2026 21:15:31 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgem2%2Fgem2bedmappability/0.0.0-0b45cc0/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gem2/gem2bedmappability/blobs/sha256:6c52ef47722ccc9a190d22965a76d12bd87f61d909f938e3a3f01dfec0ed4b82 |
| Size | 2.4 KB |
| Checksum | sha256:6c52ef47722ccc9a190d22965a76d12bd87f61d909f938e3a3f01dfec0ed4b82 |
| Downloads | 0 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0b45cc0 | 29 Apr 2026 21:15:31 (UTC) | 0 | 2.4 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:43:40 (UTC) | 1 | 2.5 KB | - |