nf-core/gawk @ 0.0.0-0c7146d
Summary
If you are like many computer users, you would frequently like to make changes in various text files wherever certain patterns appear, or extract data from parts of certain lines while discarding the rest. The job is easy with awk, especially the GNU implementation gawk.
Get started
Add the following snippet to your workflow script to include this module.
include { GAWK } from 'nf-core/gawk'
License
MIT License
Name
|
GAWK |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
The input file - Specify the logic that needs to be executed on this file on the *
|
program_file
file
|
Optional file containing logic for awk to execute. If you don't wish to use a file, you can use *
|
|---|
disable_redirect_output
boolean
|
Disable the redirection of awk output to a given file. This is useful if you want to use awk's built-in redirect to write files instead of the shell's redirect. |
|---|
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.${suffix}
file
|
The output file - if using shell redirection, specify the name of this file using *
|
versions_gawk
tuple
${task.process}
string
|
The name of the process |
|---|---|
gawk
string
|
The name of the tool |
awk -Wversion | sed '1!d; s/.*Awk //; s/,.*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gawk | GNU awk | https://www.gnu.org/software/gawk/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:43:34 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgawk/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gawk/blobs/sha256:d0388dc335073703077311df966971e4c01566dfe1ba074eced9364c8dd08aa5 |
| Size | 3.8 KB |
| Checksum | sha256:d0388dc335073703077311df966971e4c01566dfe1ba074eced9364c8dd08aa5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:43:34 (UTC) | 1 | 3.8 KB | - |