nf-core/gatk4/mergevcfs @ 0.0.0-0c7146d
Summary
Merges several vcf files
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_MERGEVCFS } from 'nf-core/gatk4/mergevcfs'
License
MIT License
Process
Name
|
GATK4_MERGEVCFS |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test'] |
|---|---|
vcf
list
|
Two or more VCF files *.{vcf,vcf.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome'] |
|---|---|
dict
file
|
Optional Sequence Dictionary as input *.dict
|
Output
3 channels
#1
tbi
tuple
meta
file
|
merged vcf file *.vcf.gz
|
|---|---|
*.tbi
file
|
index files for the merged vcf files *.tbi
|
#2
vcf
tuple
meta
file
|
merged vcf file *.vcf.gz
|
|---|---|
*.vcf.gz
file
|
merged vcf file *.vcf.gz
|
#3
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:42:46 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fmergevcfs/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/mergevcfs/blobs/sha256:0e8790bb99c2709bab833a0c40c9799a17f7923c3c1f7fb79d3abdcfe7c0ccb7 |
| Size | 2.8 KB |
| Checksum | sha256:0e8790bb99c2709bab833a0c40c9799a17f7923c3c1f7fb79d3abdcfe7c0ccb7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:42:46 (UTC) | 1 | 2.8 KB | - |