nf-core/gatk4/mergemutectstats @ 0.0.0-0c7146d
Summary
Merges mutect2 stats generated on different intervals/regions
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_MERGEMUTECTSTATS } from 'nf-core/gatk4/mergemutectstats'
License
MIT License
Process
Name
|
GATK4_MERGEMUTECTSTATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
stats
file
|
Stats file *.{stats}
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz.stats
file
|
Stats file *.vcf.gz.stats
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:42:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fmergemutectstats/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/mergemutectstats/blobs/sha256:4c277a9e4f7221e85eeb3bab8cddeef25637fdf04a246e51d878772951c94e86 |
| Size | 2.6 KB |
| Checksum | sha256:4c277a9e4f7221e85eeb3bab8cddeef25637fdf04a246e51d878772951c94e86 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:42:44 (UTC) | 1 | 2.6 KB | - |