nf-core/gatk4/composestrtablefile @ 0.0.0-0c7146d
Summary
This tool looks for low-complexity STR sequences along the reference that are later used to estimate the Dragstr model during single sample auto calibration CalibrateDragstrModel.
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_COMPOSESTRTABLEFILE } from 'nf-core/gatk4/composestrtablefile'
License
MIT License
Process
Name
|
GATK4_COMPOSESTRTABLEFILE |
|---|
Input
3 channels
fasta
file
|
FASTA reference file *.{fasta,fa}
|
|---|
fasta_fai
file
|
index of the FASTA reference file *.fai
|
|---|
dict
file
|
Sequence dictionary of the FASTA reference file *.dict
|
|---|
Output
2 channels
#1
str_table
*.zip
file
|
A zipped folder containing the STR table files *.zip
|
|---|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:41:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fcomposestrtablefile/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/gatk4/composestrtablefile/blobs/sha256:ddbe9ae4d2bdb0d9e940458f9d76cf958799231056363a79ab59cff2b198d85d |
| Size | 2.6 KB |
| Checksum | sha256:ddbe9ae4d2bdb0d9e940458f9d76cf958799231056363a79ab59cff2b198d85d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:41:21 (UTC) | 1 | 2.6 KB | - |