Nextflow Registry | nf-core/fusionreport/detect@0.0.0-0c7146d

nf-core/fusionreport/detect @ 0.0.0-0c7146d

fusionreport_detect

sort RNA-seq fusion report detect

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @praveenraj2018, rannick

fusionreport_detect

Add the following snippet to your workflow script to include this module.

include { FUSIONREPORT_DETECT } from 'nf-core/fusionreport/detect'

MIT License

Process

`Name`	`FUSIONREPORT_DETECT`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information
`arriba_fusions` file	File `*.fusions.tsv`
`starfusion_fusions` file	File containing fusions from STARfusion `*.starfusion.fusion_predictions.tsv`
`fusioncatcher_fusions` file	File containing fusions from fusioncatcher `*.fusions.tsv`

#2 tuple

`meta2` map	Groovy Map containing sample information
`fusionreport_ref` directory	File `fusion_report_db`

`tools_cutoff` integer	Discard fusions detected by less than $tools_cutoff tools both for display in fusionreport html index and to consider in fusioninspector.

Output 7 channels

#1 csv tuple

`meta` map	Groovy Map containing sample information `*.csv`
`*.csv` map	Groovy Map containing sample information `*.csv`

#2 html tuple

`meta` map	Groovy Map containing sample information `_.html`
`_.html` map	Groovy Map containing sample information `_.html`

#3 json tuple

`meta` map	Groovy Map containing sample information `*.json`
`*.json` map	Groovy Map containing sample information `*.json`

#4 report tuple

`meta` map	Groovy Map containing sample information `*.index.html`
`*index.html` map	Groovy Map containing sample information `*.index.html`

#5 versions

`versions.yml` file	File containing software versions `versions.yml`

#6 fusion_list tuple

`meta` map	Groovy Map containing sample information `*.tsv`
`*fusionreport.tsv` map	Groovy Map containing sample information `*.tsv`

#7 fusion_list_filtered tuple

`meta` map	Groovy Map containing sample information `*.tsv`
`*fusionreport_filtered.tsv` map	Groovy Map containing sample information `*.tsv`

Tool	Description	Homepage
fusionreport	Tool for parsing outputs from fusion detection tools	https://github.com/Clinical-Genomics/fusion-report

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:40:23 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffusionreport%2Fdetect/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fusionreport/detect/blobs/sha256:8c57d3e11ff9739bee7019e2b3d5b0da9ae9f960c2997234db6508e124cd9457

`meta` map	Groovy Map containing sample information `_.html`
`_.html` map	Groovy Map containing sample information `_.html`