nf-core/find/unpigz @ 0.0.0-0c7146d
Summary
A module for decompressing a large number of gzipped files, getting around the UNIX terminal argument limit
Get started
Add the following snippet to your workflow script to include this module.
include { FIND_UNPIGZ } from 'nf-core/find/unpigz'
License
MIT License
Process
Name
|
FIND_UNPIGZ |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
files_in
file
|
List of gzipped files to decompress *.gz
|
Output
3 channels
#1
file_out
tuple
meta
map
|
Groovy Map containing sample information e.g. *
|
|---|---|
ungzipped/*
file
|
Files that have been decompressed *
|
#2
versions_find
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
find
string
|
The tool name |
find --version | sed '1!d; s/.* //'
eval
|
The expression to obtain the version of the tool |
#3
versions_pigz
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
pigz
string
|
The tool name |
pigz --version 2>&1 | sed "s/^.*pigz[[:space:]]*//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| find | GNU find searches the directory tree rooted at each given starting-point by evaluating the given expression | n/a |
| pigz | pigz, which stands for Parallel Implementation of GZip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | e2d3f0ddf4a74a4a9031f3caea2e9deaec5a440b |
| Release Date | 08 Apr 2026 18:39:35 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffind%2Funpigz/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/find/unpigz/blobs/sha256:84231f207a513143075d88591368cbec47c149f19503d79edf1fb28b6bc9f7f4 |
| Size | 2.9 KB |
| Checksum | sha256:84231f207a513143075d88591368cbec47c149f19503d79edf1fb28b6bc9f7f4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e2d3f0d | 28 Apr 2026 21:15:33 (UTC) | 1 | 3.1 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:39:35 (UTC) | 1 | 2.9 KB | - |