nf-core/fgbio/callmolecularconsensusreads @ 0.0.0-0c7146d
Summary
Calls consensus sequences from reads with the same unique molecular tag.
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_CALLMOLECULARCONSENSUSREADS } from 'nf-core/fgbio/callmolecularconsensusreads'
License
MIT License
Process
Name
|
FGBIO_CALLMOLECULARCONSENSUSREADS |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false, collapse:false ] |
|---|---|
grouped_bam
file
|
The input SAM or BAM file, grouped by UMIs *.{bam,sam}
|
min_reads
integer
|
Minimum number of original reads to build each consensus read. |
|---|
min_baseq
integer
|
Ignore bases in raw reads that have Q below this value. |
|---|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Output SAM or BAM file to write consensus reads. *.{bam,sam}
|
#2
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | Tools for working with genomic and high throughput sequencing data. | https://github.com/fulcrumgenomics/fgbio |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:39:09 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fcallmolecularconsensusreads/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fgbio/callmolecularconsensusreads/blobs/sha256:791664155f326dcea5f452578312f6da792ded9fc92c6f27d2858f4fc620da38 |
| Size | 2.9 KB |
| Checksum | sha256:791664155f326dcea5f452578312f6da792ded9fc92c6f27d2858f4fc620da38 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:39:09 (UTC) | 1 | 2.9 KB | - |