nf-core/fgbio/callduplexconsensusreads @ 0.0.0-0c7146d
Summary
Uses FGBIO CallDuplexConsensusReads to call duplex consensus sequences from reads generated from the same double-stranded source molecule.
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_CALLDUPLEXCONSENSUSREADS } from 'nf-core/fgbio/callduplexconsensusreads'
License
MIT License
Process
Name
|
FGBIO_CALLDUPLEXCONSENSUSREADS |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
grouped_bam
file
|
Grouped BAM file *.bam
|
min_reads
string
|
Minimum number of raw/original reads to build each consensus read. Can be a space delimited list of 1-3 values. See fgbio documentation for more details. |
|---|
min_baseq
integer
|
Ignore bases in raw reads that have Q below this value |
|---|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.bam
file
|
consensus BAM file ${prefix}.bam
|
#2
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | A set of tools for working with genomic and high throughput sequencing data, including UMIs | http://fulcrumgenomics.github.io/fgbio/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:39:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fcallduplexconsensusreads/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fgbio/callduplexconsensusreads/blobs/sha256:bc9740e752e8621248549957ccd4cacf85160c25973e0d73adcdd472b472e328 |
| Size | 2.8 KB |
| Checksum | sha256:bc9740e752e8621248549957ccd4cacf85160c25973e0d73adcdd472b472e328 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:39:07 (UTC) | 1 | 2.8 KB | - |