nf-core/fasttree @ 0.0.0-e2d3f0d
Summary
Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
Get started
Add the following snippet to your workflow script to include this module.
include { FASTTREE } from 'nf-core/fasttree'
License
MIT License
Process
Name
|
FASTTREE |
|---|
Input
1 channel
alignment
file
|
A FASTA format multiple sequence alignment file *.{fasta,fas,fa,mfa}
|
|---|
Output
2 channels
#1
phylogeny
*.tre
file
|
A phylogeny in Newick format *.{tre}
|
|---|
#2
versions_fasttree
tuple
${task.process}
string
|
The name of the process |
|---|---|
fasttree
string
|
The name of the tool |
fasttree -help 2>&1 | head -1 | sed 's/^FastTree \([0-9.]*\) .*$/\1/'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fasttree | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences | http://www.microbesonline.org/fasttree/ |
| Version | 0.0.0-e2d3f0d |
|---|---|
| Commit ID | e2d3f0ddf4a74a4a9031f3caea2e9deaec5a440b |
| Release Date | 28 Apr 2026 21:15:31 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffasttree/0.0.0-e2d3f0d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fasttree/blobs/sha256:64b12052ce0a15d043770763cc8249ebc27b51c133c63f600f9cd7dffe4c8819 |
| Size | 2.0 KB |
| Checksum | sha256:64b12052ce0a15d043770763cc8249ebc27b51c133c63f600f9cd7dffe4c8819 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e2d3f0d | 28 Apr 2026 21:15:31 (UTC) | 1 | 2.0 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:38:51 (UTC) | 1 | 2.0 KB | - |