Nextflow Registry | nf-core/fastqdl@0.0.0-0c7146d

nf-core/fastqdl @ 0.0.0-0c7146d

Download FASTQ files from SRA or ENA repositories.

download ena fastq sra

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @camlloyd

Maintainers: @camlloyd

Download FASTQ files from SRA or ENA repositories.

Add the following snippet to your workflow script to include this module.

include { FASTQDL } from 'nf-core/fastqdl'

MIT License

Process

`Name`	`FASTQDL`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`accession` string	ENA/SRA accession to query

Output 4 channels

#1 fastq tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.fastq.gz` file	FASTQ files downloaded from ENA or SRA `*.fastq.gz`

#2 runinfo tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*-run-info.tsv` file	Tab-delimited file containing metadata for each Run downloaded `*-run-info.tsv`

#3 runmergers tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*-run-mergers.tsv` file	Tab-delimited file merge information from --group-by-experiment or --group-by-sample `*-run-mergers.tsv`

#4 versions_fastqdl tuple

`${task.process}` string	The name of the process
`fastq-dl` string	The name of the tool
`fastq-dl --version \|& sed "s/.* //"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
fastqdl	A tool to download FASTQs associated with Study, Experiment, or Run accessions.	https://github.com/rpetit3/fastq-dl

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:38:10 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ffastqdl/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/fastqdl/blobs/sha256:978fda3fd3d6fa7358bf5fce16301e4af744f18af87dc78f6ee455a9b259fcd8
Size	2.7 KB
Checksum	sha256:978fda3fd3d6fa7358bf5fce16301e4af744f18af87dc78f6ee455a9b259fcd8
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:38:10 (UTC)		1	2.7 KB	-