nf-core/evigene/tr2aacds @ 0.0.0-0c7146d
Summary
Uses evigene/scripts/prot/tr2aacds.pl to filter a transcript assembly
Get started
Add the following snippet to your workflow script to include this module.
include { EVIGENE_TR2AACDS } from 'nf-core/evigene/tr2aacds'
License
MIT License
Process
Name
|
EVIGENE_TR2AACDS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
Transcript assembly in fasta format *.{fsa,fa,fasta,fsa.gz,fa.gz,fasta.gz}
|
Output
3 channels
#1
dropset
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
dropset
directory
|
Directory containing dropped transcripts and associated files dropset
|
#2
okayset
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
okayset
directory
|
Directory containing included transcripts and associated files okayset
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| evigene | EvidentialGene is a genome informatics project for "Evidence Directed Gene Construction for Eukaryotes", for constructing high quality, accurate gene sets for animals and plants (any eukaryotes), being developed by Don Gilbert at Indiana University, gilbertd at indiana edu. | http://arthropods.eugenes.org/EvidentialGene/evigene/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:37:28 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fevigene%2Ftr2aacds/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/evigene/tr2aacds/blobs/sha256:948fe880e6253e7d7c650de263e77c4d5b9192d6b7147828861a4a34c7dbe950 |
| Size | 3.3 KB |
| Checksum | sha256:948fe880e6253e7d7c650de263e77c4d5b9192d6b7147828861a4a34c7dbe950 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:37:28 (UTC) | 1 | 3.3 KB | - |