nf-core/entrezdirect/esummary @ 0.0.0-0c7146d
Summary
Queries an NCBI database using Unique Identifier(s)
Get started
Add the following snippet to your workflow script to include this module.
include { ENTREZDIRECT_ESUMMARY } from 'nf-core/entrezdirect/esummary'
License
MIT License
Process
Name
|
ENTREZDIRECT_ESUMMARY |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
uid
string
|
Unique Identifier (UID) of record in NCBI database. Cannot be used at the same time as uids_file |
uids_file
file
|
Text file containing multiple UIDs. Cannot be used at the same time as uid. |
database
string
|
Value must be a valid Entrez database name ('assembly', etc). |
|---|
Output
2 channels
#1
xml
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.xml
file
|
Query result in XML format *.xml
|
#2
versions_esummary
tuple
${task.process}
string
|
The name of the process |
|---|---|
ENTREZDIRECT
string
|
The name of the tool |
esummary -version 2>&1
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| entrezdirect | Entrez Direct (EDirect) is a method for accessing the NCBI's set of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command line arguments. Individual operations are combined to build multi-step queries. Record retrieval and formatting normally complete the process. | https://www.ncbi.nlm.nih.gov/books/NBK179288/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:37:18 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fentrezdirect%2Fesummary/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/entrezdirect/esummary/blobs/sha256:94322ab25f17391dcba09a407778472263a129b16cca02612cbc7752f0a597ff |
| Size | 2.8 KB |
| Checksum | sha256:94322ab25f17391dcba09a407778472263a129b16cca02612cbc7752f0a597ff |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:37:18 (UTC) | 1 | 2.8 KB | - |