Nextflow Registry | nf-core/ensemblvep/filtervep@0.0.0-0c7146d

nf-core/ensemblvep/filtervep @ 0.0.0-0c7146d

Filter variants based on Ensembl Variant Effect Predictor (VEP) annotations.

annotation vcf tab filter

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

Filter variants based on Ensembl Variant Effect Predictor (VEP) annotations.

Add the following snippet to your workflow script to include this module.

include { ENSEMBLVEP_FILTERVEP } from 'nf-core/ensemblvep/filtervep'

MIT License

Process

`Name`	`ENSEMBLVEP_FILTERVEP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`input` file	VCF/TAB file annotated with vep `*.{vcf,tab,tsv,txt}`

`feature_file` file	File containing features on separate lines. To be used with --filter option.

Output 3 channels

#1 output tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.${extension}` file	VCF/TAB file `*.{vcf,tab,txt,tsv}`

#2 versions_ensemblvep tuple

`${task.process}` string	The process the versions were collected from
`ensemblvep` string	The tool name
`vep --help \| sed -n '/ensembl-vep/s/.*: //p'` eval	The command used to generate the version of the tool

#3 versions_perlmathcdf tuple

`${task.process}` string	The process the versions were collected from
`perl-math-cdf` string	The tool name
`perl -MMath::CDF -e 'print \\$Math::CDF::VERSION'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
ensemblvep	VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.	https://www.ensembl.org/info/docs/tools/vep/index.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:37:13 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fensemblvep%2Ffiltervep/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ensemblvep/filtervep/blobs/sha256:8d1fd8a3a24f63155bea1937ba1f86ff8362a6684498306221bc990816264357
Size	3.2 KB
Checksum	sha256:8d1fd8a3a24f63155bea1937ba1f86ff8362a6684498306221bc990816264357
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:37:13 (UTC)		1	3.2 KB	-