nf-core/emboss/seqret @ 0.0.0-0c7146d
Summary
Reads in one or more sequences, converts, filters, or transforms them and writes them out again
Get started
Add the following snippet to your workflow script to include this module.
include { EMBOSS_SEQRET } from 'nf-core/emboss/seqret'
License
MIT License
Process
Name
|
EMBOSS_SEQRET |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sequence
file
|
Input sequence query *.{gff,em,gb,refseq,pir,swiss,sw,txt}
|
out_ext
string
|
File extension of the output file. Unless otherwise set by a flag in |
|---|
Output
2 channels
#1
outseq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.${out_ext}
file
|
Converted sequence file *
|
#2
versions_emboss
tuple
${task.process}
string
|
The name of the process |
|---|---|
emboss
string
|
The name of the tool |
revseq -version 2>&1 | sed 's/EMBOSS://'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| emboss | The European Molecular Biology Open Software Suite | https://www.ebi.ac.uk/Tools/sfc/emboss_seqret/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:37:03 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Femboss%2Fseqret/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/emboss/seqret/blobs/sha256:8f30782adce8d6809b7bf8d74fa9742a42e814c531f9d810052d488afe590230 |
| Size | 2.6 KB |
| Checksum | sha256:8f30782adce8d6809b7bf8d74fa9742a42e814c531f9d810052d488afe590230 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:37:03 (UTC) | 1 | 2.6 KB | - |