nf-core/elprep/split @ 0.0.0-0c7146d
Summary
Split bam file into manageable chunks
Get started
Add the following snippet to your workflow script to include this module.
include { ELPREP_SPLIT } from 'nf-core/elprep/split'
License
MIT License
Process
Name
|
ELPREP_SPLIT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
List of BAM/SAM files *.{bam,sam}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
output/**.{bam,sam}
file
|
List of split BAM/SAM files *.{bam,sam}
|
#2
versions_elprep
tuple
${task.process}
string
|
The name of the process |
|---|---|
elprep
string
|
The name of the tool |
elprep 2>&1 | sed -n '2s/^.*version //;s/ compiled.*$//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| elprep | elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4. | https://github.com/ExaScience/elprep |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:36:58 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Felprep%2Fsplit/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/elprep/split/blobs/sha256:b3b98bfe46227539b3032dd1f3bf7b393ed4b36f7b2dcde83a8c87b34c993635 |
| Size | 2.7 KB |
| Checksum | sha256:b3b98bfe46227539b3032dd1f3bf7b393ed4b36f7b2dcde83a8c87b34c993635 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:36:58 (UTC) | 1 | 2.7 KB | - |