nf-core/eklipse @ 0.0.0-0c7146d
Summary
tool for detection and quantification of large mtDNA rearrangements.
Get started
Add the following snippet to your workflow script to include this module.
include { EKLIPSE } from 'nf-core/eklipse'
License
MIT License
Process
Name
|
EKLIPSE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
MT BAM/SAM file *.{bam,sam}
|
bai
file
|
MT BAM/SAM index file *.{bai,sai}
|
ref_gb
file
|
mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used *.{gb}
|
|---|
Output
4 channels
#1
genes
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*genes.csv
file
|
csv file with gene information *genes.csv
|
#2
circos
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.png
file
|
png file with circos plot of mt *.{png}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
deletions
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*deletions.csv
file
|
csv file with deletion information *deletions.csv
|
| Tool | Description | Homepage |
|---|---|---|
| eklipse | tool for detection and quantification of large mtDNA rearrangements. | https://github.com/dooguypapua/eKLIPse/tree/master |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:36:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Feklipse/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/eklipse/blobs/sha256:3a6738bb470f0d7f216952f840844c07f53f61249670671fb7cf2f9d174d3ea5 |
| Size | 2.5 KB |
| Checksum | sha256:3a6738bb470f0d7f216952f840844c07f53f61249670671fb7cf2f9d174d3ea5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:36:51 (UTC) | 1 | 2.5 KB | - |