nf-core/eigenstratdatabasetools/eigenstratsnpcoverage @ 0.0.0-0c7146d
Summary
Provide the SNP coverage of each individual in an eigenstrat formatted dataset.
Get started
Add the following snippet to your workflow script to include this module.
include { EIGENSTRATDATABASETOOLS_EIGENSTRATSNPCOVERAGE } from 'nf-core/eigenstratdatabasetools/eigenstratsnpcoverage'
License
MIT License
Process
Name
|
EIGENSTRATDATABASETOOLS_EIGENSTRATSNPCOVERAGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
geno
file
|
An Eigenstrat formatted genotype file *.{geno}
|
snp
file
|
An Eigenstrat formatted snp file *.{snp}
|
ind
file
|
An Eigenstrat formatted individual file *.{ind}
|
Output
3 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
A TSV table with the number of covered SNPs per individual. *.{tsv}
|
#2
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.json
file
|
A json table with the number of covered SNPs per individual. *.{json}
|
#3
versions_eigenstratdatabasetools
tuple
${task.process}
string
|
The name of the process |
|---|---|
eigenstratdatabasetools
string
|
The name of the tool |
eigenstrat_snp_coverage --version 2>&1 | sed 's/^.*eigenstrat_snp_coverage //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| eigenstratdatabasetools | A set of tools to compare and manipulate the contents of EingenStrat databases, and to calculate SNP coverage statistics in such databases. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0b45cc097cafcd4768e2f79b504333fee85940bc |
| Release Date | 08 Apr 2026 18:36:48 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Feigenstratdatabasetools%2Feigenstratsnpcoverage/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/eigenstratdatabasetools/eigenstratsnpcoverage/blobs/sha256:61766c4722d3ac74881f1a9aaa903dfbf998edd0b7c6aef05d776137f85400f5 |
| Size | 2.9 KB |
| Checksum | sha256:61766c4722d3ac74881f1a9aaa903dfbf998edd0b7c6aef05d776137f85400f5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0b45cc0 | 29 Apr 2026 21:15:23 (UTC) | 0 | 2.9 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:36:48 (UTC) | 1 | 2.9 KB | - |