nf-core/dssp/mkdssp @ 0.0.0-e3e0c68
Summary
Calculates secondary structure assignments from PDB files using mkdssp (DSSP). DSSP is a standard tool for assigning secondary structure to amino acids in protein structures.
Get started
Add the following snippet to your workflow script to include this module.
include { DSSP_MKDSSP } from 'nf-core/dssp/mkdssp'
License
MIT License
Process
Name
|
DSSP_MKDSSP |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pdb
file
|
Protein structure file in PDB format *.pdb
|
format
string
|
Format for the output file |
|---|
Output
2 channels
#1
dssp
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{dssp,mmcif}
file
|
File containing secondary structure output in dssp or mmCIF format *.{dssp,mmcif}
|
#2
versions_dssp
tuple
${task.process}
string
|
The name of the process |
|---|---|
dssp
string
|
The name of the tool |
mkdssp --version | sed -n 's/^mkdssp version //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| dssp | Calculates secondary structure information from PDB files. | https://github.com/PDB-REDO/dssp |
| Version | 0.0.0-e3e0c68 |
|---|---|
| Commit ID | e3e0c687eb5c129c011fca992af762ff2d4cb0f3 |
| Release Date | 27 Apr 2026 21:15:35 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdssp%2Fmkdssp/0.0.0-e3e0c68/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/dssp/mkdssp/blobs/sha256:dc52995b1dd5ce65b25f9daca421f4d6605e0bbaf6674cf6f43992075ea0e48a |
| Size | 2.4 KB |
| Checksum | sha256:dc52995b1dd5ce65b25f9daca421f4d6605e0bbaf6674cf6f43992075ea0e48a |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e3e0c68 | 27 Apr 2026 21:15:35 (UTC) | 1 | 2.4 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:36:31 (UTC) | 1 | 2.5 KB | - |