Nextflow Registry | nf-core/drep/dereplicate@0.0.0-e3e0c68

nf-core/drep/dereplicate @ 0.0.0-e3e0c68

Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome

Latest version: 0.0.0-e3e0c68

Total downloads: 2

Source: nf-core/modules

Authors: @jfy133

Maintainers: @jfy133

Dereplicates a genome set by identifying highly similar genomes and choose the best representative genome

Add the following snippet to your workflow script to include this module.

include { DREP_DEREPLICATE } from 'nf-core/drep/dereplicate'

MIT License

Process

`Name`	`DREP_DEREPLICATE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`fastas` file	List of FASTA files to dereplicate `*.{fasta,fa,fna,fas}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`drep_work` directory	Optional existing dRep working directory containing pre-computed clustering results (e.g. output from dRep compare)

Output 5 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`logger.log` file	logging file containing information about the dereplication process `*.{log}`

#2 fastas tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`dereplicated_genomes/*` file	Representative genomes for each cluster of similar genomes `*.{fasta,fa,fna,fas}`

#3 figures tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`figures/*pdf` file	Figures visualising the dereplication process, such as clustering results and representative genome selection `*.{pdf}`

#4 versions_drep tuple

`${task.process}` string	The name of the process
`drep` string	The name of the tool
`dRep \| sed '2!d;s/.v//g;s/ .//g'` eval	The expression to obtain the version of the tool

#5 summary_tables tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`data_tables/*.csv` file	Summary tables containing information about the dereplication process including cluster membership of each genome `*.{csv}`

Tool	Description	Homepage
drep	De-replication of microbial genomes assembled from multiple samples	https://drep.readthedocs.io/en/latest/

Version	0.0.0-e3e0c68
Commit ID	e3e0c687eb5c129c011fca992af762ff2d4cb0f3
Release Date	27 Apr 2026 21:15:32 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdrep%2Fdereplicate/0.0.0-e3e0c68/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/drep/dereplicate/blobs/sha256:3f1b7bd66f476931c3a041a0897dc2db06cc311f41a15622c043fad5012a2791
Size	3.6 KB
Checksum	sha256:3f1b7bd66f476931c3a041a0897dc2db06cc311f41a15622c043fad5012a2791
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-e3e0c68	27 Apr 2026 21:15:32 (UTC)