Nextflow Registry | nf-core/dragonflye@0.0.0-0c7146d

nf-core/dragonflye @ 0.0.0-0c7146d

Assemble bacterial isolate genomes from Nanopore reads

bacterial assembly nanopore

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rpetit3

Maintainers: @rpetit3

Assemble bacterial isolate genomes from Nanopore reads

Add the following snippet to your workflow script to include this module.

include { DRAGONFLYE } from 'nf-core/dragonflye'

MIT License

Process

`Name`	`DRAGONFLYE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`shortreads` file	Optional. List of FastQ files of short reads (paired-end data) that will be used to polish the draft genome. `*.fastq.gz`
`longreads` file	Input Nanopore FASTQ file `*.fastq.gz`

Output 6 channels

#1 gfa tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`{flye,miniasm,raven}-unpolished.gfa` file	Assembly graph produced by Miniasm, or Raven `{flye,miniasm,raven}-unpolished.gfa`

#2 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`dragonflye.log` file	Full log file for bug reporting `dragonflye.log`

#3 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`flye-info.txt` file	Assembly information output by Flye `flye-info.txt`

#4 contigs tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.fa` file	The final assembly produced by Dragonflye `*.fa`

#5 raw_contigs tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`{flye,miniasm,raven}.fasta` file	Raw assembly produced by the assembler (Flye, Miniasm, or Raven) `{flye,miniasm,raven}.fasta`

#6 versions_dragonflye tuple

`${task.process}` string	The name of the process
`dragonflye` string	The name of the tool
`dragonflye --version 2>&1 \| sed 's/^.*dragonflye //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
dragonflye	Microbial assembly pipeline for Nanopore reads	https://github.com/rpetit3/dragonflye

Version	0.0.0-0c7146d
Commit ID	8098ab9d800821e8b18e17fd515ed1e4ebc523f4
Release Date	08 Apr 2026 18:36:21 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdragonflye/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/dragonflye/blobs/sha256:ee9a73659069ab48e61c89fc803830ace69bb3abd4f5c62852331374eec6a15e
Size	3.5 KB
Checksum	sha256:ee9a73659069ab48e61c89fc803830ace69bb3abd4f5c62852331374eec6a15e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:36:21 (UTC)		1	3.5 KB	-