Nextflow Registry | nf-core/doubletdetection@0.0.0-0c7146d

nf-core/doubletdetection @ 0.0.0-0c7146d

Doublet detection in single-cell RNA-seq data

single-cell doublets doublet_detection

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @LeonHafner

Maintainers: @LeonHafner

Doublet detection in single-cell RNA-seq data

Add the following snippet to your workflow script to include this module.

include { DOUBLETDETECTION } from 'nf-core/doubletdetection'

MIT License

Process

`Name`	`DOUBLETDETECTION`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`h5ad` file	H5AD anndata object `*.h5ad`

Output 3 channels

#1 h5ad tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.h5ad` file	H5AD anndata object `*.h5ad`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 predictions tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.pkl` file	pandas dataframe containing the doublet classification `*.pkl`

Tool	Description	Homepage
doubletdetection	Doublet detection in single-cell RNA-seq data	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:36:13 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdoubletdetection/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/doubletdetection/blobs/sha256:9fab23afdac8442815cb0b79a2eee1a18412457ac52599751482c39594719c79
Size	2.8 KB
Checksum	sha256:9fab23afdac8442815cb0b79a2eee1a18412457ac52599751482c39594719c79
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:36:13 (UTC)		1	2.8 KB	-