Nextflow Registry | nf-core/deeptools/multibigwigsummary@0.0.0-0c7146d

nf-core/deeptools/multibigwigsummary @ 0.0.0-0c7146d

Computes the average scores for each of the files in every genomic region

bigwig deeptools plot heatmap matrix

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ugoiannacchero @daisymut

Maintainers: @ugoiannacchero @daisymut

Computes the average scores for each of the files in every genomic region

Add the following snippet to your workflow script to include this module.

include { DEEPTOOLS_MULTIBIGWIGSUMMARY } from 'nf-core/deeptools/multibigwigsummary'

MIT License

Process

`Name`	`DEEPTOOLS_MULTIBIGWIGSUMMARY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bigwigs` file	Two or more bigWig files `*.{bigWig,bw}`
`labels` list	Labels for the bigWig files used in the matrix

#2 tuple

`meta2` map	Groovy Map containing blacklist metadata e.g. [ id:'blacklist' ]
`blacklist` file	BED/GTF file containing regions to exclude from analysis `*.{bed,gtf}`

Output 2 channels

#1 matrix tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.npz` file	Matrix file from multiBigwigSummary `*.npz`

#2 versions_deeptools tuple

`${task.process}` string	The name of the process
`deeptools` string	The name of the tool
`multiBigwigSummary --version \| sed "s/multiBigwigSummary //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
deeptools	A set of user-friendly tools for normalization and visualization of deep-sequencing data	https://deeptools.readthedocs.io/en/develop/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:35:31 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fmultibigwigsummary/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/multibigwigsummary/blobs/sha256:9e1eb81049a42b95255eeab7f1c8233a49fe148e786e2595b56152ec67a32e08
Size	2.5 KB
Checksum	sha256:9e1eb81049a42b95255eeab7f1c8233a49fe148e786e2595b56152ec67a32e08
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:35:31 (UTC)		1	2.5 KB	-