nf-core/deeptools/computematrix @ 0.0.0-0c7146d
Summary
calculates scores per genome regions for other deeptools plotting utilities
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_COMPUTEMATRIX } from 'nf-core/deeptools/computematrix'
License
MIT License
Process
Name
|
DEEPTOOLS_COMPUTEMATRIX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bigwig
file
|
bigwig file containing genomic scores *.{bw,bigwig}
|
bed
file
|
bed file containing genomic regions *.{bed}
|
|---|
Output
3 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mat.tab
file
|
tabular file containing the scores of the generated matrix *.{computeMatrix.vals.mat.tab}
|
#2
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.mat.gz
file
|
gzipped matrix file needed by the plotHeatmap and plotProfile deeptools utilities *.{computeMatrix.mat.gz}
|
#3
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
computeMatrix --version | sed "s/computeMatrix //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:35:27 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fcomputematrix/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/deeptools/computematrix/blobs/sha256:73c48c457a4b5a6575073a8d52ad168a1dfa49d29c26fca3bbe2f65a6df6e393 |
| Size | 2.7 KB |
| Checksum | sha256:73c48c457a4b5a6575073a8d52ad168a1dfa49d29c26fca3bbe2f65a6df6e393 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:35:27 (UTC) | 1 | 2.7 KB | - |